Lewis Maloney struck on his 100th appearance as the Seadogs extended their unbeaten run at the Flamingo Land Stadium.
Curtis Durose put Jono Greening's men ahead inside ten minutes.
Roared on by most of the near-1,500-crowd, Boro doubled their advantage with 19 minutes left.
Former Middlesbrough midfielder Lewis Maloney unleashed a trademark screamer to surely extend the Seadogs' unbeaten home run this season.
However, a last-minute Brackley penalty meant a nervous few minutes of Boro backs to the wall before the final whistle prompted celebrations.
Greening spoke to Scarborough Athletic TV post-match:
Boro return to action looking to improve on their poor away form when they make the short trip to fellow National North outfit Farsley Celtic, between Bradford and Leeds, next Saturday.
It's in the FA Cup Second Qualifying Round and if you can't make the trip, we have live coverage on This is the Coast Extra from just before 3pm.


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